2024

• Gustafson JA*, Gibson SB*, Damaraju N*, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves CE, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal C, Zakarian C, Goodwin S, Jensen TD, Robb E; 1000 Genomes ONT Sequencing Consortium; University of Washington Center for Rare Disease Research (UW-CRDR); Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium; McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE. High-coverage Nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. Genome Res. 2024 Oct 2. PMID: 39358015 (Highlighted by GenomeWeb)
• LaFlamme CW, Rastin C, Sengupta S, Pennington HE, Russ-Hall SJ, Schneider AL, Bonkowski ES, Almanza Fuerte EP, Allan TJ, Zalusky MP, Goffena J, Gibson SB, Nyaga DM, Lieffering N, Hebbar M, Walker EV, Darnell D, Olsen SR, Kolekar P, Djekidel MN, Rosikiewicz W, McConkey H, Kerkhof J, Levy MA, Relator R, Lev D, Lerman-Sagie T, Park KL, Alders M, Cappuccio G, Chatron N, Demain L, Genevieve D, Lesca G, Roscioli T, Sanlaville D, Tedder ML, Gupta S, Jones EA, Weisz-Hubshman M, Ketkar S, Dai H, Worley KC, Rosenfeld JA, Chao HT; Undiagnosed Diseases Network; Neale G, Carvill GL; University of Washington Center for Rare Disease Research; Wang Z, Berkovic SF, Sadleir LG, Miller DE, Scheffer IE, Sadikovic B, Mefford HC. Diagnostic utility of DNA methylation analysis in genetically unsolved pediatric epilepsies and CHD2 episignature refinement. Nat Commun. 2024 Aug 6. PMID: 39107278
• Domoto-Reilly K, Distad BJ, Miller DE, Lin YH, Ivanick D, Warren AS, Jayadev S, Latimer CS. Clinicopathologic characterization of 2 individuals with TBK1 variants — 1 novel splice variant, 2 proteinopathies: a case series. Neurol Genet. 2024 Jul 24. PMID: 39055961
• Kim BY, Gellert HR, Church SH, Suvorov A, Anderson SS, Barmina O, Beskid SG, Comeault AA, Crown KN, Diamond SE, Dorus S, Fujichika T, Hemker JA, Hrcek J, Kankare M, Katoh T, Magnacca KN, Martin RA, Matsunaga T, Medeiros MJ, Miller DE, Pitnick S, Schiffer M, Simoni S, Steenwinkel TE, Syed ZA, Takahashi A, Wei KH, Yokoyama T, Eisen MB, Kopp A, Matute D, Obbard DJ, O'Grady PM, Price DK, Toda MJ, Werner T, Petrov DA. Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life. PLoS Biol. 2024 Jul 18. PMID: 39024225
• Mori T, Fujimaru T, Liu C, Patterson K, Yamamoto K, Suzuki T, Chiga M, Sekine A, Ubara Y, Miller DE, Zalusky MP, Mandai S, Ando F, Mori Y, Kikuchi H, Susa K; University of Washington Center for Rare Disease Research; Chong JX, Bamshad MJ, Tan YQ, Zhang F, Uchida S, Sohara E. CFAP47 is a novel causative gene implicated in X-linked polycystic kidney disease. medRxiv [Preprint]. 2024 Apr 5. PMID: 38633811
• Fleming A, Galey M, Briggs L, Edwards M, Hogg C, John S, Wilkinson S, Quinn E, Rai R, Burgoyne T, Rogers A, Patel MP, Griffin P, Muller S, Carr SB, Loebinger MR, Lucas JS, Shah A, Jose R, Mitchison HM, Shoemark A, Miller DE*, Morris-Rosendahl DJ*. Combined approaches, including long-read sequencing, address the diagnostic challenge of HYDIN in primary ciliary dyskinesia. Eur J Hum Genet. 2024 Apr 11. PMID: 38605126
• Mullegama SV, Kiernan KA, Torti E, Pavlovsky E, Tilton N, Sekula A, Gao H, Alaimo JT, Engleman K, Rush ET, Blocker K, Dipple KM, Fettig VM, Hare H, Glass I, Grange DK, Griffin M, Phornphutkul C, Massingham L, Mehta L, Miller DE, Thies J, Merritt JL 2nd, Muller E 2nd, Osmond M, Sawyer SL, Slaugh R, Hickey RE, Wolf B; Care4Rare Canada Consortium; Undiagnosed Diseases Network; Choudhary S, Simonović M, Zhang Y, Palculict TB, Telegrafi A, Carere DA, Wentzensen IM, Morrow MM, Monaghan KG, Yang J, Juusola J. De novo missense variants in exon 9 of SEPHS1 cause a neurodevelopmental condition with developmental delay, poor growth, hypotonia, and dysmorphic features. Am J Hum Genet. 2024 Apr 4. PMID: 38531365
• Zalusky MPG, Gustafson JA, Bohaczuk SC, Mallowry B, Reed P, Wenger T, Beckman E, Chang IJ, Paschal CR, Buchan JG, Lockwood CM, Puia-Dumitrescu M, Garalde DR, Guillory J, Markham AJ, Bamshad MJ, Eichler EE, Stergachis AB, Miller DE. 3-hour genome sequencing and targeted analysis to rapidly assess genetic risk. GIM Open. 2024 Feb 23. DOI: https://doi.org/10.1016/j.gimo.2024.101833 (Highlighted by the Brotman Baty Institute, GenomeWeb, and GroundTruths by Eric Topol)
• Wilderman A, D'haene E, Baetens M, Yankee TN, Winchester EW, Glidden N, Roets E, Van Dorpe J, Janssens S, Miller DE, Galey M, Brown KM, Stottmann RW, Vergult S, Weaver KN, Brugmann SA, Cox TC, Cotney J. A distant global control region is essential for normal expression of anterior HOXA genes during mouse and human craniofacial development. Nat Commun. 2024 Jan 2. PMID: 38167838
• Damaraju N, Miller AL, Miller DE. Long-Read DNA and RNA Sequencing to Streamline Clinical Genetic Testing and Reduce Barriers to Comprehensive Genetic Testing. J Appl Lab Med. 2024 Jan 3. PMID: 38167773
• Epi4K Consortium. The role of copy number variants in the genetic architecture of common familial epilepsies. Epilepsia. 2024 Mar. PMID: 38101940

2023

• Steigerwald C, Borsuk J, Pappas J, Galey M, Scott A, Devaney JM, Miller DE*, Abreu NJ*. CLN2 disease resulting from a novel homozygous deep intronic splice variant in TPP1 discovered using long-read sequencing. Mol Genet Metab. 2023 Oct 30;140(4):107713. PMID: 37922835
• Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE. Advances in the discovery and analyses of human tandem repeats. Emerg Top Life Sci. 2023 Oct 31:ETLS20230074. PMID: 37905568
• Lenahan AL, Squire AE, Miller DE. Panels, Exomes, Genomes, and More-Finding the Best Path Through the Diagnostic Odyssey. Pediatr Clin North Am. 2023 Oct;70(5):905-916. PMID: 37704349
• Stergachis AB, Blue EE, Gillentine MA, Wang LK, Schwarze U, Cortés AS, Ranchalis J, Allworth A, Bland AE, Chanprasert S, Chen J, Doherty D, Folta AB, Glass I, Horike-Pyne M, Huang AY, Khan AT, Leppig KA, Miller DE, Mirzaa G, Parhin A, Raskind WH, Rosenthal EA, Sheppeard S, Strohbehn S, Sybert VP, Tran TT, Wener MH, University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN), Byers PHH, Nelson SF, Bamshad MJ, Dipple KM, Jarvik GP, Hoppins S, Hisama FM. Full-length Isoform Sequencing for Resolving the Molecular Basis of Charcot-Marie-Tooth 2A. Neurol Genet. 2023 Aug 8;9(5):e200090. PMID: 37560121
• Nguyen ED, Fard VN, Kim BY, Collins S, Galey M, Nelson BR, Wakenight P, Gable SM, McKenna A, Bammler TK, MacDonald J, Okamura DM, Shendure J, Beier DR, Ramirez JM, Majesky MW, Millen KJ, Tollis M, Miller DE. Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus). G3 (Bethesda). 2023 Sep 30;13(10):jkad177. PMID: 37552705
• Koti AS, Lanis A, Finlayson S, Canny S, Feldman EA, Miller DE, Rosenwasser N, Scott AA, Wong SC, Feldman KW. Subdural hemorrhage, macrocephaly, rash, and developmental delay in an infant: A pathogenic variant in NLRP3 causes CINCA/NOMID. Am J Med Genet A. 2023 Aug 7. PMID: 37548074
• Wojcik MH, Reuter CM, Marwaha S, Mahmoud M, Duyzend MH, Barseghyan H, Yuan B, Boone PM, Groopman EE, Délot EC, Jain D, Sanchis-Juan A; Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium; Starita LM, Talkowski M, Montgomery SB, Bamshad MJ, Chong JX, Wheeler MT, Berger SI, O'Donnell-Luria A, Sedlazeck FJ, Miller DE. Beyond the exome: What's next in diagnostic testing for Mendelian conditions. Am J Hum Genet. 2023 Aug 3;110(8):1229-1248. PMID: 37541186
• Mastrorosa FK, Miller DE, Eichler EE. Applications of long-read sequencing to Mendelian genetics. Genome Med. 2023 Jun 14;15(1):42. PMID: 37316925
• Greer SU, Botello J, Hongo D, Levy B, Shah P, Rabinowitz M, Miller DE, Im K, Kumar A. Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic. J Transl Med. 2023 Jun 10;21(1):378. PMID: 37301971
• Lenahan A, Mietzsch U, Wood TR, Callahan KP, Weiss EM, Miller DE, German K, Natarajan N, Puia-Dumitrescu M, Esposito V, Kolnik S, Law JB. Characteristics, genetic testing, and diagnoses of infants with neonatal encephalopathy not due to hypoxic ischemic encephalopathy: a cohort study. J Pediatr. 2023 Jun 1;260:113533. PMID: 37269901
• Pujol-Giménez J, Mirzaa G, Blue EE, Albano G, Miller DE, Allworth A, Bennett JT, Byers PH, Chanprasert S, Chen J, Doherty D, Folta AB, Gillentine MA, Glass I, Hing A, Horike-Pyne M, Leppig KA, Parhin A, Ranchalis J, Raskind WH, Rosenthal EA, Schwarze U, Sheppeard S, Strohbehn S, Sybert VP, Timms A, Wener M; University of Washington Center for Mendelian Genomics (UW-CMG), Undiagnosed Diseases Network (UDN); Bamshad MJ, Hisama FM, Jarvik GP, Dipple KM, Hediger MA, Stergachis AB. Dominant-negative variant in SLC1A4 causes an autosomal dominant epilepsy syndrome. Ann Clin Transl Neurol. 2023 May 16. PMID: 37194416 (Highlighted by the Brotman Baty Institute)
• Li H, Berent E, Hadjipanteli S, Galey M, Muhammad-Lahbabi N, Miller DE, Crown KN. Heterozygous inversion breakpoints suppress meiotic crossovers by altering recombination repair outcomes. PLoS Genet. 2023 Apr 13;19(4):e1010702. PMID: 37053290
• Lyle ANJ, Ohlsen TJD, Miller DE, Pa-C GB, Waligorski N, Stark R, Taylor MR, Puia-Dumitrescu M. Congenital pleuropulmonary blastoma in a newborn with a variant of uncertain significance in DICER1 evaluated by RNA-sequencing. Matern Health Neonatol Perinatol. 2023 Mar 16;9(1):4. PMID: 36922881
• Miller DE, Dorador AP, Van Vaerenberghe K, Li A, Grantham EK, Cerbin S, Cummings C, Barragan M, Egidy RR, Scott AR, Hall KE, Perera A, Gilliland WD, Hawley RS, Blumenstiel JP. Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion. PLoS Genet. 2023 Feb 21;19(2):e1010598. PMID: 36809339

2022

• Dorador AP, Dalikova M, Cerbin S, Stillman CM, Zych MG, Hawley RS, Miller DE, Ray DA, Funikov SY, Evgen'ev MB, Blumenstiel JP. Paramutation-like Epigenetic Conversion by piRNA at the Telomere of Drosophila virilis. Biology (Basel). 2022 Oct 9;11(10):1480. PMID: 36290385
• Miller DE,* Hanna P,* Galey M, Reyes M, Linglart A, Eichler EE, Jüppner H. Targeted long-read sequencing identifies a retrotransposon insertion as a cause of altered GNAS exon A/B methylation in a family with autosomal dominant pseudohypoparathyroidism type 1b (PHP1B). Journal of Bone and Mineral Research. 2022 Sep;37(9):1711-1719. PMID: 35811283
• Miller DE, Lee L, Galey M, Kandhaya-Pillai R, Tischkowitz M, Amalnath D, Vithlani A, Yokote K, Kato H, Maezawa Y, Takada-Watanabe A, Takemoto M, Martin GM, Eichler EE, Hisama FM, Oshima J. Targeted long-read sequencing identifies missing pathogenic variants in unsolved Werner syndrome cases. Journal of Medical Genetics. 2022 May 9. PMID: 35534204
• Nurk S, Koren S, Rhie A, Rautiainen M, … , Miller DE, … , Eichler E, Miga K, Phillippy A. The complete sequence of a human genome. Science. 2022 Apr;376(6588):44-53. PMID: 35357919 (Highlighted by the Brotman Baty Institute)
• Aganezov S, Yan SM, Soto DC, Kirsche M, Zarate S, … , Miller DE, … , McCoy RC, Dennis MY, Zook JM, Schatz MC. A complete reference genome improves analysis of human genetic variation. Science. 2022 Apr;376(6588):eabl3533. PMID: 35357935 (Highlighted by the Brotman Baty Institute)
• Wagner J, Olson ND, Harris L, … , Miller DE, … , Chin CS, Zook J, Sedlazeck FJ. Curated variation benchmarks for challenging medically relevant autosomal genes. Nature Biotechnology. February 2022. PMID: 35132260

2021

• Giannuzzi G, Logsdon GA, Chatron N, Miller DE, Reversat J, Munson KM, Hoekzema K, Bonnet-Dupeyron MN, Rollat-Farnier PA, Baker CA, Sanlaville D, Eichler EE, Schluth-Bolard C, Reymond A. Alpha satellite insertion close to an ancestral centromeric region. Molecular Biology and Evolution. August 2021. PMID: 34464971
• Johnson JO*, Chia R*, Miller DE*, Li R*, Abramzon Y*, Kumaran R*, Alahmady N*, … , Chiò A†, Crawford TO†, Smith BN†, Traynor BJ†. Association of variants in the SPTLC1 gene with juvenile amyotrophic lateral sclerosis. JAMA Neurology. August 2021. PMID: 34459874
• Kim BY*, Wang J*, Miller DE, Barmina O, Delaney EK, Thompson A, Comeault AA, Peede D, D'Agostino EED, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenković-Radak M, Jelić M, Veselinović MS, Tanasković M, Erić P, Gao J, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Košťál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman NK, Kopp A, Matute DR*, Petrov DA*. Highly contiguous assemblies of 101 drosophilid genomes. ELife. July 2021. PMID: 34279216
• Miller DE, Sulovari A, Wang T, Loucks L, Hoekzema K, Munson KM, Lewis AP, Almanza Fuerte EP, Paschal CR, Thies J, Bennett JT, Glass I, Dipple KM, Patterson K, Bonkowski ES, Nelson Z, Squire A, Sikes M, Beckman E, Bennett RL, Earl D, Lee W, Allikmets R, Perlman SJ, Chow P, Hing AV, Adam MP, Sun A, Lam C, Chang I, University of Washington Center for Mendelian Genomics, Cherry T, Chong JX, Bamshad MJ, Nickerson DA, Mefford HC, Doherty D, Eichler EE. Targeted long-read sequencing identifies missing disease-causing variation. American Journal of Human Genetics. July 2021. PMID: 34216551 (Highlighted in AJMG, GenomeWeb, and ClinicalOMICS)
• Hildebrant CC, Patel N, Graham JM, Bamshad M, Nickerson DA, White JJ, Marvin CT, Miller DE, University of Washington Center for Mendelian Genomics, Grand KL, Sanchez-Lara PA, Schweitzer D, Alzaidan HI, Al Masseri Z, Alkurya FS, Lin AE. Further delineation of van den Ende-Gupta syndrome: Genetic heterogeneity and overlap with congenital heart defects and skeletal malformations syndrome (CHDSKM). American Journal of Medical Genetics Part A. March 2021. PMID: 33783941
• Hatkevich T, Miller DE, Miller MC, Sekelsky J. A pathway for error-free non-homologous end joining of resected meiotic double-strand breaks. Nucleic Acids Research. January 2021. PMID: 33406239

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2020

• Chen J, Xiong Z, Miller DE, Yu Z, McCroskey S, Bradford WD. Cavanaugh AM, Jasperson SL. The role of gene dosage in budding yeast centrosome scaling and spontaneous diploidization. PLoS Genetics. December 2020. PMID: 33332348
• Miller DE, Kahsai L, Dixon MJ, Buddika K, Sokol NS, Kim BY, Calvi BR, Hawley RS, Cook KR. Identification and characterization of breakpoints and mutations on Drosophila melanogaster balancer chromosomes. G3: Genes, Genomes, Genetics. November 2020. PMID: 32972999 (Selected for inclusion in the 2020 G3 Spotlight booklet)
• Miller DE. The interchromosomal effect: different meanings for different organisms [Perspective]. Genetics. November 2020. PMID: 33158985
• Wenger TL, Bly RA, Wu N, … Miller DE …, Perkins J, Dahl JP, Dobyns WB. Activating variants in PDGFRB result in a spectrum of disorders responsive to imatinib monotherapy. American Journal of Medical Genetics Part A. June 2020. PMID: 32500973
• Miller DE, Ferreira CR, Scott AI, Chang IJ. Pharmacokinetics of oral L-serine supplementation in a single patient. Molecular Genetics and Metabolism Reports. May 2020. PMID: 32489882
• Armstrong EE, Taylor RW, Miller DE, Kaelin C, Barsh G, Hadly EA, Petrov D. Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data. BMC Biology. January 2020. PMID: 31915011

2019

• Miller DE. Synaptonemal complex-deficient Drosophila melanogaster females exhibit rare DSB repair events, recurrent copy number variation, and an increased rate of de novo transposable element movement. G3: Genes, Genomes, Genetics. December 2019. PMID: 31882405
• Miller DE, Chow P, Gallagher E, Perkins JA, Wenger TL. Catel-Manzke syndrome without Manzke dysostosis. American Journal of Medical Genetics Part A. December 2019. PMID: 31833187
• Miller DE, Squire A, Bennett JT. A child with autism, behavioral issues, and dysmorphic features found to have a tandem duplication within CTNND2 by mate-pair sequencing. American Journal of Medical Genetics Part A. December 2019. PMID: 31814264
• Miller DE, Cook KR, Hawley RS. The joy of balancers [Review]. PLoS Genetics. November 2019. PMID: 31697682

2018

• Hanlon SL, Miller DE, Eche S, Hawley RS. Origin, composition, and structure of the supernumerary B chromosome of Drosophila melanogaster. Genetics. September 2018. PMID: 30249684 (Selected as a highlighted article in this issue of Genetics)
• Crown CN*, Miller DE*, Sekelsky J, Hawley RS. Local inversion heterozygosity alters recombination throughout the genome. Current Biology. September 2018. PMID: 30174188
• Miller DE, Staber C, Zeitlinger J, Hawley RS. Highly contiguous genome assemblies of 15 Drosophila species generated using Nanopore sequencing. G3: Genes, Genomes, Genetics. August 2018. PMID: 30087105 (Selected for inclusion in the 2018 G3 Spotlight booklet)
• Jones KL, McNamara EA, Longoni M, Miller DE, Rohanizadegan M, Newman LA, Hayes F, Levitsky LL, Herrington BL, Lin AE. Dual diagnoses in 152 patients with Turner syndrome: Knowledge of the second condition may lead to modification of treatment and/or surveillance. American Journal of Medical Genetics Part A. August 2018. PMID: 30079495
• Solares EA, Chakraborty M, Miller DE, Klasow S, Hall KE, Perera AG, Emerson JJ, Hawley RS. Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing. G3: Genes, Genomes, Genetics. July 2018. PMID: 30018084
• Hughes SE, Miller DE, Miller AL, Hawley RS. Female meiosis: synapsis, recombination, and segregation in Drosophila melanogaster [Review]. Genetics. March 2018. PMID: 29487146
• Miller DE, Cook KR, Hemenway E, Fang V, Miller AL, Hales KG, Hawley RS. The molecular and genetic characterization of second chromosome balancers in Drosophila melanogaster. G3: Genes, Genomes, Genetics. February 2018. PMID: 29420191 (The featured Investigation in the April 2018 issue of G3)

2016

• Miller DE, Hawley RS. Meiotic recombination: Taking the path less traveled [Commentary]. Current Biology. December 2016. PMID: 28073018
• Wolfner MF, Miller DE. Alfred Sturtevant walks into a Bar: gene dosage, gene position, and unequal crossing over in Drosophila [Commentary]. Genetics. November 2016. PMID: 28114096
• Miller DE, Cook KE, Arvanitakis A, Hawley RS. Third chromosome balancer inversions disrupt protein-coding genes and influence distal recombination events in Drosophila melanogaster. G3: Genes, Genomes, Genetics. July 2016. PMID: 27172211
• Miller DE, Smith CB, Yeganeh Kazemi N, Cockrell AJ, Arvanitakis AV, Blumenstiel JP, Jaspersen SL, Hawley RS. Whole-genome analysis of individual meiotic events in Drosophila melanogaster reveals that noncrossover gene conversions are insensitive to interference and the centromere effect. Genetics. 2016 March. PMID: 26944917 (Highlighted in the Fall 2016 Stowers Report)
• Miller DE, Cook KE, Yeganeh Kazemi N, Smith CB, Cockrell AJ, Hawley RS, Bergman CM. Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster. Proceedings of the National Academy of Sciences. 2016 February. PMID: 26903656

2015

• Chen X, Suhandynata RT, Sandhu R, Rockmill B, Mohibullah N, Niu H, Liang J, Lo HC, Miller DE, Zhou H, Börner GV, Hollingsworth NM. Phosphorylation of the synaptonemal complex protein Zip1 regulates the crossover/noncrossover decision during yeast meiosis. PLoS Biology. 2015 December. PMID: 26682552
• Gutzwiller F, Carmo CR, Miller DE, Rice DW, Newton IL, Hawley RS, Teixeira L, Bergman CM. Dynamics of Wolbachia pipientis gene expression across the Drosophila melanogaster life cycle. G3: Genes, Genomes, Genetics. 2015 October. PMID: 26497146

2014

• Xiang Y, Miller DE, Ross E, Sánchez Alvarado A, Hawley RS. Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea. Proceedings of the National Academy of Sciences. 2014 November. PMID: 25404302
• Collins KA, Unruh JR, Slaughter BD, Yu Z, Box KS, Lake CM, Nielsen RJ, Blumenstiel JP, Miller DE, Vallandingham J, Perera AG, Malanowski KE, Hawley RS. Corolla is a novel protein that contributes to the architecture of the synaptonemal complex of Drosophila. Genetics. 2014 June. PMID: 24913682 (An accompanying Genetics Primer was published for this paper: Genetics, Jan 2015;199(1):17-23)
• Miller DE, Hawley RS. Tetrad analysis in the mouse [Commentary]. Nature Genetics. September 2014. PMID: 25257082
• Bauerly E, Hughes SE, Vietti DR, Miller DE, McDowell W, Hawley RS. Discovery of supernumerary B chromosomes in Drosophila melanogaster. Genetics. 2014 January. PMID: 24478336 (Selected for inclusion in the 2014 Genetics Spotlight booklet)

2013

• Bonner AM, Hughes SE, Chisholm JA, Slaughter BD, Unruh JR, Smith SK, Collins KA, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, and Hawley RS. Binding of Drosophila polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains. Proceedings of the National Academy of Sciences. 2013 March. PMID: 23479640

2012

• Miller DE, Hawley RS. Bisphenol A and the primate ovary [Commentary]. Proceedings of the National Academy of Sciences. October 2012. PMID: 23047691
• Miller DE, Takeo S, Nandanan K, Noll AC, Perera AG, Walton KN, Gogol MM, Paulson A, Gilliland WD, Li H, Staehling K, Blumenstiel JP, Hawley RS. A whole-chromosome analysis of meiotic recombination in Drosophila melanogaster. G3: Genes, Genomes, Genetics. 2012 February. PMID: 22384403

2011

• Miller DE, Prasannan CB, Villar MT, Fenton AW, Artigues A. HDXFinder: Automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry. Journal of the American Society for Mass Spectrometry. 2011 November. PMID: 22083588

2010

• Villar VT, Miller DE, Fenton AW, Artigues A. SAIDE: A semi-automated interface for hydrogen/deuterium exchange mass spectrometry. Proteomica. 2010 June. PMID: 25309638